MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-2-o36

Family name MIR-2 (all species)
Seed CACAGCC
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-2b
Paralogues Cte-Mir-2-o37  Cte-Mir-2-o38  Cte-Mir-2-o39  Cte-Mir-2-o40  Cte-Mir-2-o41  Cte-Mir-2-o42  Cte-Mir-2-o43 
Orthologues
Node of Origin (locus) C. teleta
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_933: 10045-10113 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o36)
Mir-71 CAPTEscaffold_933: 9934-9996 [+] Ensembl
Mir-2-o36 CAPTEscaffold_933: 10045-10113 [+] Ensembl
Mir-2-o37 CAPTEscaffold_933: 10173-10226 [+] Ensembl
Mir-2-o38 CAPTEscaffold_933: 10413-10471 [+] Ensembl
Mir-2-o39 CAPTEscaffold_933: 10541-10616 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUUUGGCUUCCGUCGUGACCUCUGUGUGGCGUCAAUGUUGGUAUGUCAUAGUCCCCUGUGACGCGUAGGCCCUAUCACAGCCAACCUUGAUGAGCCUUUCAGAGGUAUCUCUCAGCACUGCCUCCUU
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Structure
        10          20        30          40        50        60   
UCGUUUGGCUUCCGUCGUG--       UGU   --|    U      A   C   GUCCCCUGUG 
                     ACCUCUG   GGC  GUCAA GUUGGU UGU AUA          A
                     UGGAGAC   CCG  UAGUU CAACCG ACA UAU          C
UUCCUCCGUCACGACUCUCUA       UUU   AG^    C      -   C   CCCGGAUGCG 
       120       110       100        90         80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cte-Mir-2-o36_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGUCAAUGUUGGUAUGUCAUA -22
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Mature sequence

Cte-Mir-2-o36_3p

mirBase accessionMIMAT0009504
Sequence
46- UCACAGCCAACCUUGAUGAGCCU -69
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