MirGeneDB ID | Cte-Mir-1996 |
Family name |
MIR-1996 (all species) |
Seed |
UCAAGUG |
Species |
Polychaete worm (Capitella teleta) |
MiRBase ID |
cte-mir-1996a
|
Paralogues |
|
Orthologues |
Efe-Mir-1996-P1
Efe-Mir-1996-P2
Efe-Mir-1996-P3
|
Node of Origin (locus) |
Annelida
|
Node of Origin (family) |
Annelida
|
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_158: 126000-126057 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGCGAUUUUUUGUCUAGCGUCUCGCUGUCUCAAGUGAGGUCAGUGCUGCUGUGUUUUCUAACAGGGGCACUGUCUUCAAUUGAAACCGUUGGACCGGAACUCACCAUCAAUUUCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGCGAUUUUUUGUCUAGC--| C U C G U G GUGUU
GUCU GC GU UCAA UGAGG CAGUGCU CU U
CAGG UG CA AGUU ACUUC GUCACGG GA U
CACUUUAACUACCACUCAAGGC^ U C A A U G CAAUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cte-Mir-1996_5p |
mirBase accession | MIMAT0009707 |
Sequence |
0- CUCAAGUGAGGUCAGUGCUGCU -22
Get sequence
|
Star sequence |
Cte-Mir-1996_3p* (predicted) |
mirBase accession | None |
Sequence |
36- GGGCACUGUCUUCAAUUGAAAC -58
Get sequence
|