MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GUAAGUU
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1990a
Paralogues Cte-Mir-1990-P1 
Orthologues Cgi-Mir-1990  Efe-Mir-1990-P2  Lan-Mir-1990  Lgi-Mir-1990  Npo-Mir-1990 
Node of Origin (locus) Annelida
Node of Origin (family) Lophotrochozoa
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_12: 606811-606875 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1990-P2)
Mir-1990-P1 CAPTEscaffold_12: 600050-600112 [+] Ensembl
Mir-2692 CAPTEscaffold_12: 600189-600249 [+] Ensembl
Mir-1990-P2 CAPTEscaffold_12: 606811-606875 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUAAAGAAGGAAAAUCGUGAGCGCAGUUGUAAGUUGACAUAGUCCCAGGGCCAAGUACAGCGAUGCAACCCGGGACUACGUUAACUUCCAGCCUCGAACACGGAGCGACUGAUGAGUAGAGC
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Structure
        10          20        30        40        50        60  
UGAAUAAAGAAGGAAAA--|    AG  CA    U        A       A  GCCAAGUAC 
                   UCGUG  CG  GUUG AAGUUGAC UAGUCCC GG         \
                   GGCAC  GC  CGAC UUCAAUUG AUCAGGG CC         A
CGAGAUGAGUAGUCAGCGA^    AA  UC    C        C       C  AACGUAGCG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Cte-Mir-1990-P2_5p

mirBase accessionMIMAT0013546
Sequence
0- UGUAAGUUGACAUAGUCCCAGG -22
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Star sequence

Cte-Mir-1990-P2_3p* (predicted)

mirBase accessionNone
Sequence
43- CGGGACUACGUUAACUUCCAGC -65
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