MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-367
Paralogues Cpo-Mir-92-P1a  Cpo-Mir-92-P1c  Cpo-Mir-92-P1d  Cpo-Mir-92-P2c  Cpo-Mir-92-P2d 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Dno-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gja-Mir-92-P2a  Hsa-Mir-92-P2a  Isc-Mir-92  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_43: 11471746-11471805 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-92-P2a scaffold_43: 11471746-11471805 [-] UCSC
Mir-430-P4 scaffold_43: 11471856-11471915 [-] UCSC
Mir-430-P3 scaffold_43: 11471975-11472035 [-] UCSC
Mir-430-P2 scaffold_43: 11472099-11472157 [-] UCSC
Mir-430-P1 scaffold_43: 11472221-11472282 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGGGACCACCGCGCACGGCCCGGGCCGCCACUGUUGCUAGUGUGCAACUCUGCUGCGUGCACCCUGGAAUUGCACUUUAGCAAUGGUGACGGCCCGCGGCCACCUCGCCGUCCCGCUCU
Get precursor sequence
Structure
        10         20         30        40        50         
AGGGGACCACCGCGCAC-    -|      C            U      C   GCUGCG 
                  GGCC CGGGCCG CACUGUUGCUAG GUGCAA UCU      U
                  CCGG GCCCGGC GUGGUAACGAUU CACGUU AGG      G
UCUCGCCCUGCCGCUCCA    C^      A            U      A   UCCCAC 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-92-P2a_5p* (predicted)

mirBase accessionMIMAT0047197
Sequence
0- ACUGUUGCUAGUGUGCAACUCU -22
Get sequence
Mature sequence

Cpo-Mir-92-P2a_3p (predicted)

mirBase accessionMIMAT0047198
Sequence
38- AAUUGCACUUUAGCAAUGGUGA -60
Get sequence