MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-652

Family name MIR-652 (all species)
Seed AUGGCGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-652
Paralogues
Orthologues Bta-Mir-652  Cfa-Mir-652  Dno-Mir-652  Ete-Mir-652  Hsa-Mir-652  Mml-Mir-652  Mmu-Mir-652  Ocu-Mir-652  Rno-Mir-652 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_46: 10888951-10889012 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACAUGGGCACCACGAAUGGCUAUGCACUGCACAACCCUAGGAAGGGGUGCCAUUCACAUGGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGAAGUGUACAACCUACACAACUGUACUCGUC
Get precursor sequence
Structure
        10         20        30        40        50        60   
ACAUGGGCACCACGAAU-| CUA      G           GAAGG           CAUGGA 
                  GG   UGCACU CACAACCCUAG     GGUGCCAUUCA      \
                  CC   AUGUGA GUGUUGGGAUC     CCGCGGUAAGU      C
CUGCUCAUGUCAACACAU^ AAC      A           A----           UAAUAU 
120       110       100        90            80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-652_5p* (predicted)

mirBase accessionMIMAT0047355
Sequence
0- ACAACCCUAGGAAGGGGUGCCAUUCA -26
Get sequence
Mature sequence

Cpo-Mir-652_3p

mirBase accessionMIMAT0047356
Sequence
41- AAUGGCGCCACUAGGGUUGUG -62
Get sequence