MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-506-o6

Family name MIR-506 (all species)
Seed UCCCCAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-509f
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Cpo-Mir-506-P6 
Orthologues Bta-Mir-506-P6  Ete-Mir-506-P6e  Ete-Mir-506-P6f  Hsa-Mir-506-P6a1  Hsa-Mir-506-P6a2  Hsa-Mir-506-P6b  Hsa-Mir-506-P6c  Mml-Mir-506-P6a  Mml-Mir-506-P6b1  Mml-Mir-506-P6b2  Mml-Mir-506-P6c1  Mml-Mir-506-P6c2  Ocu-Mir-506-P6  Rno-Mir-506-P6 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_84: 2722022-2722078 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-o6)
Mir-506-P1 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-o8 scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-o4 scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-o6 scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-o5 scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-o1 scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-o3 scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2b scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2c scaffold_84: 2771646-2771702 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCAUCUACCAGCAUGCUGUGUGUGGUACCCUUCCCCAACGGCUGUCAAUCAUAGAUGAUAAAAUGUGAUUAACGGCUGUGGGGGAGAGUAACUCAUGACAUGUACAACAUACCAGUG
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Structure
        10          20        30        40        50        
CCAUCUACCAGCAUGCU-  -|  UGG   C        A       C       GAUG 
                  GU GUG   UAC CUUCCCCA CGGCUGU AAUCAUA    A
                  CA UAC   AUG GAGGGGGU GUCGGCA UUAGUGU    U
GUGACCAUACAACAUGUA  G^  UCA   A        -       A       AAAA 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-506-o6_5p

mirBase accessionMIMAT0047333
Sequence
0- UUCCCCAACGGCUGUCAAUCAUA -23
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Co-mature sequence

Cpo-Mir-506-o6_3p

mirBase accessionMIMAT0047334
Sequence
35- UGAUUAACGGCUGUGGGGGAGA -57
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