MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-340
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Dno-Mir-340  Ete-Mir-340  Hsa-Mir-340  Mdo-Mir-340  Mml-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2  Sha-Mir-340-v1  Sha-Mir-340-v2 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(cavPor3)		 scaffold_176: 84280-84344 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGUUCUAAAACCACUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUUUGUCUUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAGACCUGGUAUCUUAACCACAGAUCCUUGC
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Structure
        10          20        30        40         50        60 
GAGUUCUAAAACCACUU--     U   G  AU       CAA-|     U    GUCAUUUG 
                   GUACC GGU UG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCA AC  AUAUUUC    ACUCUG CUAG        C
CGUUCCUAGACACCAAUUC     U   G  CG       AUUG^     C    GGUGUUUU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-340_5p
mirBase accessionMIMAT0047178
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Star sequence

Cpo-Mir-340_3p*
mirBase accessionMIMAT0047179
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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