MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-30c-2
Paralogues Cpo-Mir-30-P1a  Cpo-Mir-30-P1b  Cpo-Mir-30-P1d  Cpo-Mir-30-P2a  Cpo-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_4: 54621135-54621195 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2b)		 Mir-30-P1b scaffold_4: 54598662-54598723 [+] UCSC
Mir-30-P2b scaffold_4: 54621135-54621195 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCAGCCUAGAGAGCACUGAGUGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGACAGUAAGGAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAAGAGAACU
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Structure
        10            20        30        40        50        60 
UCAGCCUAGAGAGCACU----|  UGA    UACU       U   ACA         GUGGAC 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      \
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      A
UCAAGAGAAAUCAACUAAAGG^  C--    CUCU       C   A--         GGAAUG 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-30-P2b_5p
mirBase accessionMIMAT0046907
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Cpo-Mir-30-P2b_3p*
mirBase accessionMIMAT0046909
Sequence 
39- CUGGGAGAAGGCUGUUUACUCU -61
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