MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-215
Paralogues Cpo-Mir-192-P2 
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_13: 2522064-2522123 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUGCACUGUUACCGAGUGGGGUGCAGGAGUAUGACCUACAAAUUGACAGACGAUGUGCCUGAGUCUGUCUGUCACUUCUGUAGGCCAACAUCCUGUACUCCGCCUCAACCCCAGACACCA
Get precursor sequence
Structure
        10          20        30        40         50         
AUGCACUGUUACCGAGU--           GUA  A      -| U         AUGUGC 
                   GGGGUGCAGGA   UG CCUACA AA UGACAGACG      \
                   CCUCAUGUCCU   AC GGAUGU UU ACUGUCUGU      C
ACCACAGACCCCAACUCCG           ACA  C      C^ C         CUGAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-192-P1_5p

mirBase accessionMIMAT0047117
Sequence
0- AUGACCUACAAAUUGACAGACG -22
Get sequence
Star sequence

Cpo-Mir-192-P1_3p*

mirBase accessionMIMAT0047118
Sequence
37- UCUGUCACUUCUGUAGGCCAACA -60
Get sequence