MirGeneDB ID | Cpo-Mir-192-P1 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-215
|
Paralogues |
Cpo-Mir-192-P2
|
Orthologues |
Aca-Mir-192-P1
Ami-Mir-192-P1
Bta-Mir-192-P1
Cfa-Mir-192-P1
Cli-Mir-192-P1
Cmi-Mir-192-P1
Cpi-Mir-192-P1
Dno-Mir-192-P1
Ebu-Mir-192-o1
Ete-Mir-192-P1
Gga-Mir-192-P1
Gja-Mir-192-P1
Hsa-Mir-192-P1
Lch-Mir-192-P1
Mdo-Mir-192-P1
Mml-Mir-192-P1
Mmu-Mir-192-P1
Mun-Mir-192-P1
Oan-Mir-192-P1
Oan-Mir-192-P1-as
Ocu-Mir-192-P1
Pbv-Mir-192-P1
Pma-Mir-192-o1
Rno-Mir-192-P1
Spt-Mir-192-P1
Sto-Mir-192-P1
Tgu-Mir-192-P1
Xla-Mir-192-P1a
Xla-Mir-192-P1b
Xtr-Mir-192-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (cavPor3) |
scaffold_13: 2522064-2522123 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AUGCACUGUUACCGAGUGGGGUGCAGGAGUAUGACCUACAAAUUGACAGACGAUGUGCCUGAGUCUGUCUGUCACUUCUGUAGGCCAACAUCCUGUACUCCGCCUCAACCCCAGACACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGCACUGUUACCGAGU-- GUA A -| U AUGUGC
GGGGUGCAGGA UG CCUACA AA UGACAGACG \
CCUCAUGUCCU AC GGAUGU UU ACUGUCUGU C
ACCACAGACCCCAACUCCG ACA C C^ C CUGAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cpo-Mir-192-P1_5p |
mirBase accession | MIMAT0047117 |
Sequence |
0- AUGACCUACAAAUUGACAGACG -22
Get sequence
|
Star sequence |
Cpo-Mir-192-P1_3p* |
mirBase accession | MIMAT0047118 |
Sequence |
37- UCUGUCACUUCUGUAGGCCAACA -60
Get sequence
|