MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-188-P3

Family name MIR-188 (all species)
Seed ACCCAUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-660
Paralogues Cpo-Mir-188-P1  Cpo-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cfa-Mir-188-P3  Dno-Mir-188-P3  Ete-Mir-188-P3  Hsa-Mir-188-P3  Mml-Mir-188-P3  Ocu-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_132: 3012570-3012628 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-188-P3)
Mir-188-P2 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P1 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P1 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P3 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P5 scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P4 scaffold_132: 3014248-3014306 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GUGCAGAAGAGUAAACUGCUCCUUUUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUUAAAAUAUCUCCUGUAUGCAUGGAUUAUAGGAGGAUGAGCUUUGUCAUCAUGAACCUUC
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Structure
        10          20        30         40        50         
GUGCAGAAGAGUAAACU--    C      C   C-|   U      C    U   GAAUU 
                   GCUC UUUUCC AUA  CCAU GCAUAU GGAG UGU     \
                   CGAG AGGAGG UAU  GGUA CGUAUG CCUC AUA     C
CUUCCAAGUACUACUGUUU    U      A   UA^   -      U    U   AAAUU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-188-P3_5p

mirBase accessionMIMAT0047365
Sequence
0- UACCCAUUGCAUAUCGGAGUUGU -23
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Star sequence

Cpo-Mir-188-P3_3p*

mirBase accessionMIMAT0047366
Sequence
36- AUCUCCUGUAUGCAUGGAUUAUA -59
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