MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-181a-1
Paralogues Cpo-Mir-181-P1b  Cpo-Mir-181-P1c  Cpo-Mir-181-P2a  Cpo-Mir-181-P2b 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_12: 23445099-23445160 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P1a)		 Mir-181-P1a scaffold_12: 23445099-23445160 [+] UCSC
Mir-181-P2a scaffold_12: 23445282-23445342 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGCACUAUGAGCUUAGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUGGCCAACCAUCAUCUACUCCAUGGCU
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Structure
        10         20         30        40        50        60  
AGCACUAUGAGCUUAGA-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGG  UC   UGU AGUUGC  CAGCUAC CA        A
UCGGUACCUCAUCUACUA    C^  UA  CCA   U      --       -  AAACUAAA 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-181-P1a_5p
mirBase accessionMIMAT0047040
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Cpo-Mir-181-P1a_3p*
mirBase accessionMIMAT0047041
Sequence 
40- ACCAUCGACCGUUGAUUGUACC -62
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