MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-154-P13

Family name MIR-154 (all species)
Seed AGUAGAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-411
Paralogues Cpo-Mir-154-P1  Cpo-Mir-154-P2-v1  Cpo-Mir-154-P2-v2  Cpo-Mir-154-P3a-v1  Cpo-Mir-154-P3a-v2  Cpo-Mir-154-P3b  Cpo-Mir-154-P4-o1  Cpo-Mir-154-P5  Cpo-Mir-154-P6  Cpo-Mir-154-P7  Cpo-Mir-154-P8  Cpo-Mir-154-P9  Cpo-Mir-154-P10  Cpo-Mir-154-P12  Cpo-Mir-154-P14  Cpo-Mir-154-P15  Cpo-Mir-154-P16  Cpo-Mir-154-P17  Cpo-Mir-154-P18  Cpo-Mir-154-P19  Cpo-Mir-154-P20-v1  Cpo-Mir-154-P20-v2  Cpo-Mir-154-P21  Cpo-Mir-154-P22  Cpo-Mir-154-P23  Cpo-Mir-154-P24  Cpo-Mir-154-P25  Cpo-Mir-154-P26  Cpo-Mir-154-P27  Cpo-Mir-154-P28  Cpo-Mir-154-P29  Cpo-Mir-154-P30  Cpo-Mir-154-P31  Cpo-Mir-154-P34  Cpo-Mir-154-P36 
Orthologues Bta-Mir-154-P13  Cfa-Mir-154-P13  Dno-Mir-154-P13  Ete-Mir-154-P13  Hsa-Mir-154-P13-v1  Hsa-Mir-154-P13-v2  Mml-Mir-154-P13  Mmu-Mir-154-P13  Ocu-Mir-154-P13  Rno-Mir-154-P13 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_111: 1083271-1083326 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-154-P13)
Mir-154-P7 scaffold_111: 1082082-1082140 [+] UCSC
Mir-154-P13 scaffold_111: 1083271-1083326 [+] UCSC
Mir-154-P2-v1 scaffold_111: 1083727-1083781 [+] UCSC
Mir-154-P2-v2 scaffold_111: 1083728-1083780 [+] UCSC
Mir-154-P8 scaffold_111: 1084914-1084970 [+] UCSC
Mir-154-P30 scaffold_111: 1085473-1085528 [+] UCSC
Mir-154-P3a-v1 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P3a-v2 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P26 scaffold_111: 1085914-1085971 [+] UCSC
Mir-154-P4-o1 scaffold_111: 1086616-1086675 [+] UCSC
Mir-154-P18 scaffold_111: 1088359-1088414 [+] UCSC
Mir-154-P29 scaffold_111: 1088693-1088749 [+] UCSC
Mir-154-P22 scaffold_111: 1090490-1090547 [+] UCSC
Mir-154-P19 scaffold_111: 1091798-1091855 [+] UCSC
Mir-376-P4 scaffold_111: 1095062-1095119 [+] UCSC
Mir-154-P23 scaffold_111: 1095544-1095600 [+] UCSC
Mir-376-P2 scaffold_111: 1095759-1095816 [+] UCSC
Mir-376-P1 scaffold_111: 1096085-1096142 [+] UCSC
Mir-154-P28 scaffold_111: 1097764-1097823 [+] UCSC
Mir-154-P9 scaffold_111: 1099199-1099261 [+] UCSC
Mir-154-P17 scaffold_111: 1099737-1099794 [+] UCSC
Mir-154-P21 scaffold_111: 1100599-1100662 [+] UCSC
Mir-154-P27 scaffold_111: 1101145-1101203 [+] UCSC
Mir-154-P24 scaffold_111: 1102750-1102809 [+] UCSC
Mir-154-P31 scaffold_111: 1104334-1104387 [+] UCSC
Mir-154-P16 scaffold_111: 1104622-1104679 [+] UCSC
Mir-154-P10 scaffold_111: 1107038-1107096 [+] UCSC
Mir-134 scaffold_111: 1107399-1107459 [+] UCSC
Mir-154-P15 scaffold_111: 1108140-1108198 [+] UCSC
Mir-154-P1 scaffold_111: 1112305-1112362 [+] UCSC
Mir-154-P20-v2 scaffold_111: 1113039-1113094 [+] UCSC
Mir-154-P20-v1 scaffold_111: 1113040-1113093 [+] UCSC
Mir-154-P6 scaffold_111: 1114436-1114495 [+] UCSC
Mir-541 scaffold_111: 1116256-1116321 [+] UCSC
Mir-154-P14 scaffold_111: 1117221-1117276 [+] UCSC
Mir-154-P5 scaffold_111: 1117336-1117391 [+] UCSC
Mir-154-P12 scaffold_111: 1117656-1117711 [+] UCSC
Mir-154-P3b scaffold_111: 1118056-1118114 [+] UCSC
Mir-154-P25 scaffold_111: 1118353-1118408 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCGGUGUCUCUGUGUGGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCUCC
Get precursor sequence
Structure
        10            20        30        40        50       
CUCGGUGUCUCUGUGUG----|    UG   AGA    A      AUA       CUUUA 
                     GUACU  GAG   UAGU GACCGU   GCGUACG     U
                     UAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
CCUCGGAGCCCCUACCUAAAC^    --   CCA    C      CAA       AGUGU 
    110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-154-P13_5p

mirBase accessionMIMAT0047237
Sequence
0- UAGUAGACCGUAUAGCGUACG -21
Get sequence
Star sequence

Cpo-Mir-154-P13_3p*

mirBase accessionMIMAT0047238
Sequence
35- UAUGUAACACGGUCCACUAAC -56
Get sequence