MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-16a
Paralogues Cpo-Mir-15-P1a  Cpo-Mir-15-P1b  Cpo-Mir-15-P1c  Cpo-Mir-15-P1d  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c  Cpo-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)
scaffold_6: 59875390-59875454 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P2a)
Mir-3613 scaffold_6: 59835890-59835947 [-] UCSC
Mir-15-P2a scaffold_6: 59875390-59875454 [-] UCSC
Mir-15-P1a scaffold_6: 59875535-59875593 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCUCAUAUGAUAGCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGUGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCAAUAAUCUACAACUGUAUC
Get precursor sequence
Structure
        10          20        30         40        50        60 
GCUCAUAUGAUAGCAAU--      AG   C          -| A        UGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
CUAUGUCAACAUCUAAUAA      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-15-P2a_5p

mirBase accessionMIMAT0046853
Sequence
0- UAGCAGCACGUAAAUAUUGGUG -22
Get sequence
Star sequence

Cpo-Mir-15-P2a_3p*

mirBase accessionMIMAT0046854
Sequence
42- CCAGUAUUAACUGUGCUGCUGAA -65
Get sequence