| MirGeneDB ID | Cpo-Mir-12078 |
|---|
| Family name |
MIR-12078 (all species) |
|---|
| Seed |
GGUGGAA |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-12078
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. porcellus
|
|---|
| Node of Origin (family) |
C. porcellus
|
|---|
Genome context
(cavPor3) |
scaffold_41: 4308585-4308650 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGACUAGCUCCUUAUCAUGCCAUUCAGUAUAGGUGGAACUCUUGAUAGUCUGCUCACUUUCACUAUAGCUCAGACUAUCAGAGUCUCCAUUCCUGUAAUGUUUGGUGCUAUUCCACUGUCUGUGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGACUAGCUCCUUAUCAU-- UU G -- -| U GCUCACUUU
GCCA CA UAUAGG UGGA ACUCU GAUAGUCU C
UGGU GU AUGUCC ACCU UGAGA CUAUCAGA A
CGGUGUCUGUCACCUUAUCG UU A UU C^ - CUCGAUAUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cpo-Mir-12078_5p |
| mirBase accession | MIMAT0047457 |
|---|
| Sequence |
0- AGGUGGAACUCUUGAUAGUCU -21
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-12078_3p* |
| mirBase accession | MIMAT0047458 |
|---|
| Sequence |
43- ACUAUCAGAGUCUCCAUUCCUGU -66
Get sequence
|
|---|
