MirGeneDB 2.1

MirGeneDB ID

Cpo-Let-7-P1b

Family name LET-7 (all species)
Seed GAGGUAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-let-7e
Paralogues Cpo-Let-7-P1c  Cpo-Let-7-P1d  Cpo-Let-7-P2a1  Cpo-Let-7-P2a2  Cpo-Let-7-P2a3  Cpo-Let-7-P2b1  Cpo-Let-7-P2b2  Cpo-Let-7-P2b3  Cpo-Let-7-P2c1  Cpo-Let-7-P2c2  Cpo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Ami-Let-7-P1b  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1b  Cfa-Let-7-P1b  Cgi-Let-7  Cin-Let-7-P1  Cpi-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1b  Gja-Let-7-P1b  Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Hme-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1b  Lgi-Let-7  Loc-Let-7-P1b  Mal-Let-7-P1b1  Mal-Let-7-P1b2  Mdo-Let-7-P1b  Mml-Let-7-P1b  Mmu-Let-7-P1b  Mun-Let-7-P1b  Npo-Let-7  Oan-Let-7-P1b  Obi-Let-7  Ocu-Let-7-P1b  Ovu-Let-7  Pbv-Let-7-P1b  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1b  Sha-Let-7-P1b  Sko-Let-7  Spt-Let-7-P1b  Spu-Let-7  Sto-Let-7-P1b  Tca-Let-7  Tni-Let-7-P1b1  Tni-Let-7-P1b2  Xbo-Let-7  Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xtr-Let-7-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_70: 6340207-6340273 [-] UCSC
Clustered miRNAs
(< 50kb from Let-7-P1b)
Mir-10-P3b scaffold_70: 6339828-6339887 [-] UCSC
Let-7-P1b scaffold_70: 6340207-6340273 [-] UCSC
Mir-10-P2b scaffold_70: 6340368-6340427 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAUCUGUCCACCUUGCCGCGCCCCCCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGAAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCAGGCUGCGCCCUGCACGGGACAGGGCGG
Get precursor sequence
Structure
        10          20        30        40        50        60   
GAUCUGUCCACCUUGCC--|   CC  C   CU   G                UGAGAAGGACA 
                   GCGC  CC GGG  GAG UAGGAGGUUGUAUAGU           \
                   CGCG  GG CCC  UUC AUCCUCCGGCAUAUCA           C
GGCGGGACAGGGCACGUCC^   UC  A   CU   G                CUAGAGGAACC 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Cpo-Let-7-P1b_5p

mirBase accessionMIMAT0046826
Sequence
0- UGAGGUAGGAGGUUGUAUAGUU -22
Get sequence
Star sequence

Cpo-Let-7-P1b_3p*

mirBase accessionMIMAT0046827
Sequence
45- CUAUACGGCCUCCUAGCUUUCC -67
Get sequence