MirGeneDB 2.1

MirGeneDB ID

Cpi-Novel-1

Family name CPI-NOVEL-1 (all species)
Seed AGCCCUU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1729
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584702: 3225755-3225811 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUAUUUUCCUCUUUCUGGAGCUGAUCCUGAAGCCCUUACUCACAUGAGCAGUCCCACAUAAGUCCUCAAGGUGAGUAAGGGCUGCGAGAUUGGACCCUAAAUACCACUGUUGCGGA
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Structure
        10          20        30        40         50       
AGUAUUUUCCUCUUUCU--  AG UG   C  A             A-|   CAGUCCC 
                   GG  C  AUC UG AGCCCUUACUCAC  UGAG       A
                   CC  G  UAG GC UCGGGAAUGAGUG  ACUC       C
AGGCGUUGUCACCAUAAAU  CA GU   A  G             GA^   CUGAAUA 
     110       100        90        80        70        60
Deep sequencing
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CommentAlthough named mir-1729 by miRBase this gene not only differs from the avian mir-1729 sequence in the seed sequence it is also not synentic with the avian mir-1729 and is thus given a different identifer here.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Novel-1_5p

mirBase accessionMIMAT0037954
Sequence
0- AAGCCCUUACUCACAUGAGCA -21
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Star sequence

Cpi-Novel-1_3p*

mirBase accessionMIMAT0037955
Sequence
35- CUCAAGGUGAGUAAGGGCUGCG -57
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