MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-9583

Family name MIR-9583 (all species)
Seed AGCAGUC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9583
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584564: 1237382-1237441 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGGGCCACUGCUUGGGAUGGAUGGGAGCCAGCAGUCGGAGAAGAAGAGACGGUGACUAACCUCCGUAACUUGUUCUUCGAGAUGUUGCUCACGUCCAGUCCAUGACCCGCCCUCCAUC
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Structure
        10          20        30         40        50         
CCAGGGCCACUGCUUGGGA--|     G    C    G-        G   AG   GUGAC 
                     UGGAUG GAGC AGCA  UCGGAGAA AAG  ACG     U
                     ACCUGC CUCG UUGU  AGCUUCUU UUC  UGC     A
CUACCUCCCGCCCAGUACCUG^     A    -    AG        G   AA   CUCCA 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-9583_5p

mirBase accessionMIMAT0037962
Sequence
0- CAGCAGUCGGAGAAGAAGAGACG -23
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Co-mature sequence

Cpi-Mir-9583_3p

mirBase accessionMIMAT0037963
Sequence
37- UAACUUGUUCUUCGAGAUGUUGC -60
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