MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-7-P3

Family name MIR-7 (all species)
Seed GGAAGAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-7b
Paralogues Cpi-Mir-7-P1  Cpi-Mir-7-P2  Cpi-Mir-7-P4 
Orthologues Aae-Mir-7  Ami-Mir-7-P3  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P3  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dre-Mir-7-P3  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Gmo-Mir-7-P3  Hme-Mir-7  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P3  Lgi-Mir-7  Loc-Mir-7-P3  Lpo-Mir-7  Mal-Mir-7-P3  Mun-Mir-7-P3  Npo-Mir-7  Obi-Mir-7  Ovu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o3  Pmi-Mir-7  Sko-Mir-7  Spt-Mir-7-P3  Spu-Mir-7  Tca-Mir-7  Tni-Mir-7-P3  Xbo-Mir-7  Xla-Mir-7-P3a  Xla-Mir-7-P3b  Xtr-Mir-7-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584431: 3477613-3477677 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCUCACCACGCUCGUUUCUGGGUCGGUCUGGAAGACUUGUGAUUUUGUUGUUUCCAGUGUCAGGGAAGCGAACAACAAAUCCCAGUCUCCUCACAGCCCCAGGACUGGCCUCCAAGAAUCCAU
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Structure
        10          20        30        40        50        60   
AUCCUCACCACGCUCGU--|      UCG  CU   A    U U     U     UUCCAGUGU 
                   UUCUGGG   GU  GGA GACU G GAUUU GUUGU         C
                   AGGACCC   CA  CCU CUGA C CUAAA CAACA         A
UACCUAAGAACCUCCGGUC^      CGA  CU   -    - C     -     AGCGAAGGG 
   120       110       100        90          80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-7-P3_5p

mirBase accessionMIMAT0037621
Sequence
0- UGGAAGACUUGUGAUUUUGUUGU -23
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Star sequence

Cpi-Mir-7-P3_3p*

mirBase accessionNone
Sequence
44- CAACAAAUCCCAGUCUCCUCA -65
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