MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-449b
Paralogues Cpi-Mir-34-P1  Cpi-Mir-34-P2a  Cpi-Mir-34-P2b  Cpi-Mir-34-P3a  Cpi-Mir-34-P3c  Cpi-Mir-34-P3d 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584718: 641059-641119 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3a JH584718: 640084-640149 [+] UCSC Ensembl
Mir-34-P3b JH584718: 641059-641119 [+] UCSC Ensembl
Mir-34-P3c JH584718: 641224-641281 [+] UCSC Ensembl
Mir-34-P3d JH584718: 642854-642912 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGCCUUGCUUAGGCUCCUUGUGUCUGGUAGGCAGUGUACUGUUAGCUGGCUGCUUUGUGUGAAUCUAGCAGUCUCUACUACACUGUCACCUGCUGCAGGGCCAACUCCCUGUUAUUUUA
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Structure
        10          20         30        40        50        60  
GUUGCCUUGCUUAGGCU--      -| CU   A         CUGU   CU      UUUGUG 
                   CCUUGU GU  GGU GGCAGUGUA    UAG  GGCUGC      U
                   GGGACG CG  CCA CUGUCACAU    AUC  CUGACG      G
AUUUUAUUGUCCCUCAACC      U^ U-   -         C---   U-      AUCUAA 
 .       110       100         90         80            70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-34-P3b_5p

mirBase accessionMIMAT0037880
Sequence
0- AGGCAGUGUACUGUUAGCUGGCUGC -25
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Star sequence

Cpi-Mir-34-P3b_3p*

mirBase accessionNone
Sequence
40- CAGUCUCUACUACACUGUCAC -61
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