MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-30b
Paralogues Cpi-Mir-30-P1a  Cpi-Mir-30-P1b  Cpi-Mir-30-P1d  Cpi-Mir-30-P2b  Cpi-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584579: 585588-585647 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a JH584579: 585588-585647 [-] UCSC Ensembl
Mir-30-P1a JH584579: 593254-593315 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUUCAUAUUGUUACUGAUUUUUAGUUCAUGUAAACAUCCUACACUCAGCUAUAAAACAUAGAACGGCUGGGAGGUGGAUGUUUACUUCAACUGACUUGGAAAGGCAGCCUUCCUGAAU
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Structure
        10        20          30        40         50         
GUAUUCAUAUUGUUACUGAUUU--|     CAU          U  A-       AUAAAA 
                        UUAGUU   GUAAACAUCC AC  CUCAGCU      C
                        AGUCAA   CAUUUGUAGG UG  GGGUCGG      A
UAAGUCCUUCCGACGGAAAGGUUC^     CUU          -  GA       CAAGAU 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-30-P2a_5p

mirBase accessionMIMAT0037676
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Cpi-Mir-30-P2a_3p*

mirBase accessionMIMAT0037677
Sequence
38- CUGGGAGGUGGAUGUUUACUUC -60
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