MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-1677-o6

Family name MIR-1677 (all species)
Seed UGACUUC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1677a
Paralogues Cpi-Mir-1677-o7  Cpi-Mir-1677-o8  Cpi-Mir-1677-P1a1  Cpi-Mir-1677-P1a2  Cpi-Mir-1677-P1b  Cpi-Mir-1677-P2  Cpi-Mir-1677-P4 
Orthologues Cli-Mir-1677-P6  Gga-Mir-1677-P6  Tgu-Mir-1677-P6 
Node of Origin (locus) C. picta
Node of Origin (family) Diapsida
Genome context
(chrPic1)
JH584713: 4439235-4439298 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGACAGAUGAAGUCUGGAUGGGGCCUGAUUCAGAUCCCAUUGAAGUCAAUGAGAAUAUUUCAUUUGAGCUACUGACUUCAGUGGGCUUUGGUUCAGACCCACAGUCACUUGCUGAUGUAGUCA
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Structure
        10           20        30        40        50        60 
UGGACAGAUGAAGUCUGGA---|   GC    UU    U             AUGAGAAUAUU 
                      UGGG  CUGA  CAGA CCCAUUGAAGUCA           U
                      ACCC  GACU  GUUU GGGUGACUUCAGU           C
ACUGAUGUAGUCGUUCACUGAC^   A-    UG    C             CAUCGAGUUUA 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-1677-o6_5p*

mirBase accessionMIMAT0037920
Sequence
0- UCAGAUCCCAUUGAAGUCAAUG -22
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Mature sequence

Cpi-Mir-1677-o6_3p

mirBase accessionMIMAT0037921
Sequence
42- CUGACUUCAGUGGGCUUUGGUU -64
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