MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-155

Family name MIR-155 (all species)
Seed UAAUGCU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-155a
Paralogues
Orthologues Aca-Mir-155  Ami-Mir-155  Bta-Mir-155  Cfa-Mir-155  Cli-Mir-155  Cmi-Mir-155  Cpo-Mir-155  Dno-Mir-155  Dre-Mir-155  Ebu-Mir-155  Ete-Mir-155  Gga-Mir-155  Gja-Mir-155  Gmo-Mir-155  Hsa-Mir-155  Lch-Mir-155  Loc-Mir-155  Mal-Mir-155  Mdo-Mir-155  Mml-Mir-155  Mmu-Mir-155  Mun-Mir-155  Oan-Mir-155  Ocu-Mir-155  Pbv-Mir-155  Pma-Mir-155  Rno-Mir-155  Sha-Mir-155  Spt-Mir-155-P3  Spt-Mir-155-P4  Sto-Mir-155  Tgu-Mir-155  Tni-Mir-155  Xla-Mir-155-P1  Xla-Mir-155-P2  Xtr-Mir-155 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584544: 80841-80901 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUGGAGUUCUUCUGUAGGCUGUAUGUUGUUAAUGCUAAUCGUGAUAGGGGUUUUUACCUAUGACUGACUCCUACAUGUUAGCAUUAACACUGUAUGAUGCCUUUUACCAGAACUCAUAU
Get precursor sequence
Structure
        10        20          30        40        50        60 
CUCUGGAGUUCUUCUGUA   U--|   GU            U    A        UUUACC 
                  GGC   GUAU  UGUUAAUGCUAA CGUG UAGGGGUU      \
                  CCG   UAUG  ACAAUUACGAUU GUAC AUCCUCAG      U
UAUACUCAAGACCAUUUU   UAG^   UC            -    -        UCAGUA 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-155_5p

mirBase accessionMIMAT0037789
Sequence
0- UUAAUGCUAAUCGUGAUAGGGGUU -24
Get sequence
Star sequence

Cpi-Mir-155_3p*

mirBase accessionNone
Sequence
39- CUCCUACAUGUUAGCAUUAACA -61
Get sequence