MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-9640

Family name MIR-9640 (all species)
Seed CAGAUGG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-9640
Paralogues
Orthologues
Node of Origin (locus) C. livia
Node of Origin (family) C. livia
Genome context
(colLiv2)
scaffold684: 20874-20935 [+]
Precursor
(pre-Mir +30nt flank)
CAGUUUGAUUACACUCCAGCACGGGCGGCAGAGCCUCGCGCUGACUCUGAAGGUUCUGGUAACUCGACUUCAGAUGGCAGAGCUGAGGCUGCGCCGCUCGCUCGGUGACGGCGAAUUGCGCA
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Structure
        10        20         30         40         50          
CAGUUUGAUUACACUCCAGCA-        AG      -  G   AC-|      GUUCUGG 
                      CGGGCGGC  AGCCUC GC CUG   UCUGAAG       \
                      GCUCGCCG  UCGGAG CG GAC   AGACUUC       U
ACGCGUUAAGCGGCAGUGGCUC        CG      U  A   GGU^      AGCUCAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-9640_5p*

mirBase accessionMIMAT0038773
Sequence
0- GAGCCUCGCGCUGACUCUGAAG -22
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Mature sequence

Cli-Mir-9640_3p

mirBase accessionMIMAT0038774
Sequence
39- UCAGAUGGCAGAGCUGAGGCUGC -62
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