MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-92-1
Paralogues Cli-Mir-92-P1c  Cli-Mir-92-P2a  Cli-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(colLiv2)
scaffold183: 2837255-2837313 [-]
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-92-P1a scaffold183: 2837255-2837313 [-]
Mir-19-P2a scaffold183: 2837370-2837430 [-]
Mir-17-P4a scaffold183: 2837507-2837565 [-]
Mir-19-P1a scaffold183: 2837681-2837738 [-]
Mir-17-P2a scaffold183: 2837820-2837884 [-]
Mir-17-P1a scaffold183: 2837971-2838031 [-]
Precursor
(pre-Mir +30nt flank)
AGUGUGGAAAAUUUGUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGUCUCUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAGGCUGAAACAC
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Structure
        10          20        30        40        50         
AGUGUGGAAAAUUUGUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG     G
CACAAAGUCGGAGAUAGG  U^ UU   GU            U   -        UCUCU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-92-P1a_5p*

mirBase accessionMIMAT0038473
Sequence
0- AGGUUGGGAUCAGUUGCAAUGCU -23
Get sequence
Mature sequence

Cli-Mir-92-P1a_3p

mirBase accessionMIMAT0038474
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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