Mir-181-P2b

MirGeneDB ID

Cli-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-181b-2

Paralogues

Cli-Mir-181-P1a Cli-Mir-181-P1b Cli-Mir-181-P2a

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold686: 918309-918368 [-]

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P2b scaffold686: 918309-918368 [-]
Mir-181-P1b scaffold686: 919231-919290 [-]

Precursor
(pre-Mir +30nt flank)

CUGCGUCUUCAGCAUCUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUCUUUUCUGUCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGCCAGCUCGGAGAGCGCAGC

Get precursor sequence

Structure

        10         20         30        40        50        60
CUGCGUCUUCAGCAUCUAA-   -|    AUCAA         CU           UUCUU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
CGACGCGAGAGGCUCGACCG   A^    CAAAC         --           CUGUC 
.       110       100        90        80          70