MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-301a
Paralogues Cli-Mir-130-P1a  Cli-Mir-130-P1b  Cli-Mir-130-P2a  Cli-Mir-130-P3a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold580: 631257-631318 [+]
Clustered miRNAs
(< 50kb from Mir-130-P2b)		 Mir-130-P1b scaffold580: 630675-630737 [+]
Mir-130-P2b scaffold580: 631257-631318 [+]
Precursor
(pre-Mir +30nt flank)
ACCUGCGCAGAAUUCUUGCUGCUAACGAACGCUCUGACUUUAUUGCACUACUGUACUUCCCAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCCGAAAGCAGAAACCCAGCCAUGGUCGCUU
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Structure
        10          20        30           40        50         
ACCUGCGCAGAAUUCUUG--     AA  AAC   C    U---|         A  GUACUU 
                    CUGCU  CG   GCU UGAC    UUAUUGCACU CU      \
                    GACGA  GC   CGA ACUG    GAUAACGUGA GA      C
UUCGCUGGUACCGACCCAAA     AA  CUA   A    UUAU^         C  UCGACC 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-130-P2b_5p*
mirBase accessionMIMAT0038611
Sequence 
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Cli-Mir-130-P2b_3p
mirBase accessionMIMAT0038612
Sequence 
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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