MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-92-o75

Family name MIR-92 (all species)
Seed AUUGCAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-367
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o71  Cin-Mir-92-o72  Cin-Mir-92-o73  Cin-Mir-92-o74  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)		 HT000037.1: 5191-5250 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o75)		 Mir-92-o78 HT000037.1: 4884-4935 [-] UCSC Ensembl
Mir-92-o77 HT000037.1: 4978-5031 [-] UCSC Ensembl
Mir-92-o76 HT000037.1: 5092-5146 [-] UCSC Ensembl
Mir-92-o75 HT000037.1: 5191-5250 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACUAAAUUUAAAAGUACAGUUGGUGUUCAGUGCUAUUCAUGUGCAAGAGUUAAUACAGCCGUGCUAUUGCACAUUGGAAUGGUACUUACCACCAUGUACACAUGCUACAUAUAAUAUC
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Structure
        10            20        30        40          50        
GUACUAAAUUUAAAAGU----|  GU     UUC          --        G   UAAUA 
                     ACA  UGGUG   AGUGCUAUUC  AUGUGCAA AGU     C
                     UGU  ACCAC   UCAUGGUAAG  UACACGUU UCG     A
CUAUAAUAUACAUCGUACACA^  --     CAU          GU        A   UGCCG 
.       110       100          90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-92-o75_5p*
mirBase accessionMIMAT0016415
Sequence 
0- AGUGCUAUUCAUGUGCAAGAGU -22
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Mature sequence

Cin-Mir-92-o75_3p
mirBase accessionMIMAT0016416
Sequence 
36- UAUUGCACAUUGGAAUGGUACUUA -60
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