MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-1502-P3

Family name MIR-1502 (all species)
Seed UGAACUU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1502a
Paralogues Cin-Mir-1502-P1  Cin-Mir-1502-P2  Cin-Mir-1502-P4 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 569197-569256 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1502-P3)		 Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCUUCAUUGGUCAAGCGGCAAGCGAGUAUUGAACUUUCUAAGGAAUAGGUUUAAACCAAAACUACAACCUAAUUCUUGAAAGUCAACAUUCCCUCCCGCACAAACAACAACGACAAAC
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Structure
        10           20        30        40        50        60
CGUCUUCAUUGGUCAAG---|  CA  C    A    A     U     A      UAAACC 
                    CGG  AG GAGU UUGA CUUUC AAGGA UAGGUU      A
                    GCC  UC CUUA AACU GAAAG UUCUU AUCCAA      A
CAAACAGCAACAACAAACAC^  C-  C    C    -     -     A      CAUCAA 
.       110       100         90         80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-1502-P3_5p
mirBase accessionMIMAT0016487
Sequence 
0- UUGAACUUUCUAAGGAAUAGGUUU -24
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Star sequence

Cin-Mir-1502-P3_3p*
mirBase accessionMIMAT0016488
Sequence 
39- CCUAAUUCUUGAAAGUCAACA -60
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