| MirGeneDB ID | Cin-Mir-1495 |
|---|
| Family name |
MIR-1495 (all species) |
|---|
| Seed |
GUGUAAU |
|---|
| Species |
Sea Squirt (Ciona intestinalis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. intestinalis
|
|---|
| Node of Origin (family) |
C. intestinalis
|
|---|
Genome context
(ci3) |
6: 607126-607179 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCAUCGUAAAGCAUCAAUUCUACGCCGGCCGCUCCAUAUAUGUCACACAUUCUGUUUUGAAGUGUAAUGUCUAUGGAAGCAGUGGGCGUCAGAAUAAUAUCAACUAUUUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCAUCGUAAAGCAUCA- - G C -| U C A UG
AUUCU ACGCC GC GC UCCAUA AUGU ACAC UUC U
UAAGA UGCGG UG CG AGGUAU UGUA UGUG AAG U
AGAAUUUAUCAACUAUAA C G A A^ C A - UU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cin-Mir-1495_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGCUCCAUAUAUGUCACACAUUC -23
Get sequence
|
|---|
| Mature sequence |
Cin-Mir-1495_3p |
| mirBase accession | None |
|---|
| Sequence |
31- AGUGUAAUGUCUAUGGAAGCAGU -54
Get sequence
|
|---|
