MirGeneDB 2.1

MirGeneDB ID

Cgi-Novel-8

Family name CGI-NOVEL-22 (all species)
Seed GGUUAAG
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold705: 16090-16154 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCGACCAAAAAUUCCAGCAUAAAAGCCAGAGGUUAAGAAAUUUAGGAGUCUUUUAGUAAUGAAAUGCUGUAGACUUCAAUUUUCUUUUAUCUCUGGUGAAAAAAUCAACUACCCGGUACUUCCA
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Structure
        10        20          30         40        50        60  
AUCGACCAAAAAUUCCAGCAUAAAA--         U-|     U  A       UUUAGUAAU 
                           GCCAGAGGU  AAGAAA UU GGAGUCU         \
                           UGGUCUCUA  UUCUUU AA CUUCAGA         G
ACCUUCAUGGCCCAUCAACUAAAAAAG         UU^     U  -       UGUCGUAAA 
   120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Novel-8_5p

mirBase accessionNone
Sequence
0- AGGUUAAGAAAUUUAGGAGUCU -22
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Star sequence

Cgi-Novel-8_3p*

mirBase accessionNone
Sequence
43- ACUUCAAUUUUCUUUUAUCUCU -65
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