MirGeneDB 2.1

MirGeneDB ID

Cgi-Novel-4

Family name CGI-NOVEL-10 (all species)
Seed CAUACAA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold1742: 63371-63430 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCGAAUCGCUCUGUCCCCAGACAAGCACACAUACAACUCGGUCGUAAGACUGUCUGGUAAUGUUCAGAUACGACUAGGUUGUACGUGUAUUUGUACAAUUAAUCCGAAUGGUCAACCA
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Structure
        10        20          30        40        50         
GUUCGAAUCGCUCUGUCCCCAG--|    C    A       CG      AGACUGUCUG 
                        ACAAG ACAC UACAACU  GUCGUA          G
                        UGUUU UGUG AUGUUGG  CAGCAU          U
ACCAACUGGUAAGCCUAAUUAACA^    A    C       AU      AGACUUGUAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Novel-4_5p

mirBase accessionNone
Sequence
0- ACAUACAACUCGGUCGUAAGACU -23
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Co-mature sequence

Cgi-Novel-4_3p

mirBase accessionNone
Sequence
38- GAUACGACUAGGUUGUACGUGU -60
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