MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold602: 444840-444896 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUCUGGGGUAAAGUGCUUGACUUGUUGUGAAAGACAUGGGUAGUGAGAUGUUUUAAGGGUCACCUUGCUACUCUGUCUUUUGCAUGAGGUCAGGAAAUUCCAUCAGAUGAUCAG
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Structure
        10          20        30        40        50        
UUUUUCUGGGGUAAAGUG--|       GU  UG       U      UG  A  UUUU 
                    CUUGACUU  UG  AAAGACA GGGUAG  AG UG    A
                    GGACUGGA  AC  UUUCUGU CUCAUC  UC AC    A
GACUAGUAGACUACCUUAAA^       GU  GU       -      GU  C  UGGG 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Cgi-Mir-71_3p*
mirBase accessionNone
Sequence 
35- CCUUGCUACUCUGUCUUUUGCA -57
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