MirGeneDB ID | Cgi-Mir-67-P5 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
|
Paralogues |
Cgi-Mir-67-P4
Cgi-Mir-67-P6
|
Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Csc-Mir-67
Cte-Mir-67
Dma-Mir-67
Dpu-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ovu-Mir-67
Sme-Mir-67
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
Protostomia
|
Genome context (CGI_GCA_000297895.1) |
scaffold146: 102638-102698 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUCCUGUAGGAAUUUGGUUUUGUACAGAUCCUUAUUCAACCUGGUUGUGGUGCCCAAUAAACCAUCAUCACAACCUCCUUGAAUGAGUGUUCUUGCAGACCACCACCGCAAUAUCAACCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUCCUGUAGGAAUUUGGU--| CA UC CCU CCCAAU
UUUGUA GA CUUAUUCAA GGUUGUGGUG \
AGACGU UU GAGUAAGUU CCAACACUAC A
CCCAACUAUAACGCCACCACC^ UC GU CCU UACCAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Cgi-Mir-67-P5_5p* |
mirBase accession | None |
Sequence |
0- CCUUAUUCAACCUGGUUGUGGUG -23
Get sequence
|
Mature sequence |
Cgi-Mir-67-P5_3p |
mirBase accession | None |
Sequence |
38- UCACAACCUCCUUGAAUGAGUGU -61
Get sequence
|