MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-277

Family name MIR-277 (all species)
Seed AAAUGCA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Cel-Mir-277  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Sme-Mir-277-P6a  Sme-Mir-277-P6b  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Tca-Mir-277 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold622: 474084-474143 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGAAAACAGUAACUGUGUUUCACUGGUCAGUACCAGAUGUGCAUUGUGCAUCCGUAGUAGUAGUGUAAAUGCAUAAUCUGGUAUGUGACCGGCCGAUGCGCUCUCAUCCUAACCUUCA
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Structure
        10         20         30          40        50         
GGGGAAAACAGUAACUGU-  U  A-       -        -|       G    UCCGUA 
                   GU UC  CUGGUCA GUACCAGA UGUGCAUU UGCA      \
                   CG AG  GGCCAGU UAUGGUCU AUACGUAA AUGU      G
ACUUCCAAUCCUACUCUCG  U  CC       G        A^       -    GAUGAU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-277_5p*

mirBase accessionNone
Sequence
0- AGUACCAGAUGUGCAUUGUGCA -22
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Mature sequence

Cgi-Mir-277_3p

mirBase accessionNone
Sequence
37- UAAAUGCAUAAUCUGGUAUGUGA -60
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