| MirGeneDB ID | Cgi-Mir-1994-P2 |
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| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-1994-P1
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| Orthologues |
Cte-Mir-1994
Efe-Mir-1994
Esc-Mir-1994-P2
Lgi-Mir-1994-P2
Npo-Mir-1994-P2
Obi-Mir-1994-P2
Ovu-Mir-1994-P2
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| Node of Origin (locus) |
Mollusca
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold950: 63808-63866 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAAAUUGACAAAACAUGGCGACUGCUCUCAGGGUGGUAAUGCUGCCUACAUGGUGAGGUGACAACAUGAGACAGUGUGUCCUCCCUAAGUUUCAGAUCUAAGCCGAAUGCUGCUGAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAAAUUGACAAAACAUGGC - CU-| C U UA C A GUGAG
GA CUG CU AGGG GG AUGCUG CU CAUG G
CU GAC GA UCCC CC UGUGAC GA GUAC U
GAAGUCGUCGUAAGCCGAAU A UUU^ A U UG A - AACAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-1994-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGUGGUAAUGCUGCCUACAUG -23
Get sequence
|
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| Mature sequence |
Cgi-Mir-1994-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGAGACAGUGUGUCCUCCCUAA -59
Get sequence
|
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