| MirGeneDB ID | Cgi-Mir-1993 |
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| Family name |
MIR-1993 (all species) |
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| Seed |
AUUAUGC |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Cte-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Esc-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
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| Node of Origin (locus) |
Protostomia
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| Node of Origin (family) |
Protostomia
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Genome context
(CGI_GCA_000297895.1) |
scaffold506: 136468-136528 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACAGGACCACGAUUUGAUUGCCCUAAAAUUUCGGGAAUAGCAGUAAAAUGCAUUGAAGUAUACAUCCUGUAUUAUGCUGUUAUUCACGAGAAGGAAGGGUUUGUGUCUACUUAAGAUUGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACAGGACCACGAUUUGAUU--| AAAA G A UUGAAGU
GCCCU UUUCG GAAUAGCAGUA AAUGCA \
UGGGA AGAGC CUUAUUGUCGU UUAUGU A
GCGUUAGAAUUCAUCUGUGUU^ AGGA A A CCUACAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-1993_5p* |
| mirBase accession | None |
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| Sequence |
0- UCGGGAAUAGCAGUAAAAUGCA -22
Get sequence
|
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| Mature sequence |
Cgi-Mir-1993_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUUAUGCUGUUAUUCACGAGA -61
Get sequence
|
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