| MirGeneDB ID | Cgi-Mir-1990 |
|---|
| Family name |
MIR-1990 (all species) |
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| Seed |
GGGACUA |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1990-P1
Cte-Mir-1990-P2
Efe-Mir-1990-P1
Efe-Mir-1990-P2
Efe-Mir-1990-P3
Lan-Mir-1990
Lgi-Mir-1990
Npo-Mir-1990
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| Node of Origin (locus) |
Lophotrochozoa
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold264: 40660-40717 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGGAUACCCUCUAGUUUGUGGCUCGUGGGCAGUAAGUUGAUGGGGUCCCAGGUUGUGAGGAAUUCCCGGGACUACGUCAACUACUUGCUUAAGUGCUACUCAUCUCGUCAAAAUUUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGGAUACCCUCUAGUUU-- UCG -| A GG A UUGUG
GUGGC UGGGC AGUA GUUGAUG GUCCC GG A
CAUCG AUUCG UCAU CAACUGC CAGGG CC G
CGUUUAAAACUGCUCUACU UGA U^ - AU C UUAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-1990_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUAAGUUGAUGGGGUCCCAGG -22
Get sequence
|
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| Mature sequence |
Cgi-Mir-1990_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CGGGACUACGUCAACUACUUGC -58
Get sequence
|
|---|
