MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-1984

Family name MIR-1984 (all species)
Seed GCCCUAU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Esc-Mir-1984  Lgi-Mir-1984  Npo-Mir-1984  Obi-Mir-1984-P1  Obi-Mir-1984-P2  Ovu-Mir-1984-P1  Ovu-Mir-1984-P2 
Node of Origin (locus) Mollusca
Node of Origin (family) Mollusca
Genome context
(CGI_GCA_000297895.1)
scaffold339: 59463-59521 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAUUUGUUACUUACACACGGGACGGCAUGCCCUAUCCGUCAGUCGCUGCCUCGUUUUGAAUAGCAGGGACUGUCGAAUGGGAUUUGCUGUCUCGGGUCGCUCUUCAGUCGUAUUUU
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Structure
        10        20          30        40        50         
UUUCAUUUGUUACUUACACA--|         UGC     C  U     G    CUCGUU 
                      CGGGACGGCA   CCUAU CG CAGUC CUGC      \
                      GCUCUGUCGU   GGGUA GC GUCAG GACG      U
UUUUAUGCUGACUUCUCGCUGG^         UUA     A  U     G    AUAAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-1984_5p

mirBase accessionNone
Sequence
0- UGCCCUAUCCGUCAGUCGCUGC -22
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Star sequence

Cgi-Mir-1984_3p*

mirBase accessionNone
Sequence
37- AGGGACUGUCGAAUGGGAUUUG -59
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