MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-10-P3

Family name

MIR-10 (all species)

Seed

Species

Pacific oyster (Crassostrea gigas)

MiRBase ID

Paralogues

Cgi-Mir-10-P1 Cgi-Mir-10-P2 Cgi-Mir-10-P5 Cgi-Mir-10-P6

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Aca-Mir-10-P3c Aca-Mir-10-P3d Ami-Mir-10-P3b Ami-Mir-10-P3c Ami-Mir-10-P3d Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Bta-Mir-10-P3c Bta-Mir-10-P3d Cbr-Mir-10-P3m Cbr-Mir-10-P3n Cel-Mir-10-P3m Cel-Mir-10-P3n Cfa-Mir-10-P3b Cfa-Mir-10-P3c Cfa-Mir-10-P3d Cin-Mir-10-P3 Cli-Mir-10-P3c Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3b Cpi-Mir-10-P3c Cpi-Mir-10-P3d Cpo-Mir-10-P3b Cpo-Mir-10-P3c Cpo-Mir-10-P3d Csc-Mir-10-P3r1 Csc-Mir-10-P3r2 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Ebu-Mir-10-P3e Ebu-Mir-10-P3f Efe-Mir-10-P3g Efe-Mir-10-P3h Efe-Mir-10-P3i Esc-Mir-10-P3 Ete-Mir-10-P3b Ete-Mir-10-P3c Ete-Mir-10-P3d Gga-Mir-10-P3c Gga-Mir-10-P3d Gja-Mir-10-P3b Gja-Mir-10-P3c Gja-Mir-10-P3d Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Hsa-Mir-10-P3b Hsa-Mir-10-P3c Hsa-Mir-10-P3d Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3b Lch-Mir-10-P3c Lch-Mir-10-P3d Lgi-Mir-10-P3 Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3c Mdo-Mir-10-P3d Mml-Mir-10-P3b Mml-Mir-10-P3c Mml-Mir-10-P3d Mmu-Mir-10-P3b Mmu-Mir-10-P3c Mmu-Mir-10-P3d Mun-Mir-10-P3b Mun-Mir-10-P3c Mun-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3b Oan-Mir-10-P3c Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3b Ocu-Mir-10-P3c Ocu-Mir-10-P3d Ovu-Mir-10-P3 Pbv-Mir-10-P3b Pbv-Mir-10-P3c Pbv-Mir-10-P3d Pfl-Mir-10-P3j1 Pfl-Mir-10-P3j2 Pfl-Mir-10-P3k Pfl-Mir-10-P3l Pma-Mir-10-P3o1 Pma-Mir-10-P3o2 Pmi-Mir-10-P3 Rno-Mir-10-P3b Rno-Mir-10-P3c Rno-Mir-10-P3d Sha-Mir-10-P3b Sha-Mir-10-P3c Sha-Mir-10-P3d Sko-Mir-10-P3 Sme-Mir-10-P3s Sme-Mir-10-P3t Sme-Mir-10-P3u Spt-Mir-10-P3b Spt-Mir-10-P3c Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3b Sto-Mir-10-P3c Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3c Tgu-Mir-10-P3d Tni-Mir-10-P3b2 Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3b Xtr-Mir-10-P3c Xtr-Mir-10-P3d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(CGI_GCA_000297895.1)

scaffold43364: 40021-40072 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUGUGACUUGGAUCUUUCACUUCCUCUCUCCCUGAGACCAUAACUUGUGAAUAUUUUCACAGGUUCUGGUUUCUGGACUAGAGUGGGUGUUGCCAUCGACGACGUCACAC

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Structure

        10          20        30         40        50     
AUGUGUGACUUGGAUCUUU--    UC    C-|  CU       U         AU 
                     CACU  CUCU  UCC  GAGACCA AACUUGUGA  A
                     GUGG  GAGA  AGG  CUUUGGU UUGGACACU  U
CACACUGCAGCAGCUACCGUU    GU    UC^  U-       C         UU 
110       100        90        80         70        60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Mature sequence

Cgi-Mir-10-P3_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCAUAACUUGUGA -22

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Star sequence

Cgi-Mir-10-P3_3p*

mirBase accession

None

Sequence

30- ACAGGUUCUGGUUUCUGGACUA -52

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