| MirGeneDB ID | Cfa-Novel-22 |
|---|
| Family name |
CFA-NOVEL-22 (all species) |
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| Seed |
ACAGAGA |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chrX: 55489338-55489394 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGGUCCCACCACUGAUGGCAUCAAGGAGUGACAGAGAGACCCUUGGUAUUGUUCUCCUUCCUCAAUACUAAGGGUCUCUCUGAUGUUUCUGCUUGCAUCUUACACUCAAUUGGUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGGUCCCACCACUGAUG--| UCA GU A UUCUC
GCA AGGA G CAGAGAGACCCUUGGUAUUG \
CGU UCUU U GUCUCUCUGGGAAUCAUAAC C
AAUGGUUAACUCACAUUCUA^ UCG UG A UCCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-22_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GACAGAGAGACCCUUGGUAUUG -22
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Novel-22_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AUACUAAGGGUCUCUCUGAUGU -57
Get sequence
|
|---|
