MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-2

Family name CFA-NOVEL-2 (all species)
Seed CCAGGGC
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr10: 16859592-16859655 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCAGAGAGACCCAUUUCCCGGACCCAUCCCAGGGCCGACCGCGCAGGUCGCUGGUGAAGCACACGGGGCGACAGCGGGCAGGCCUUGCCAUGGGCUCGUGGAGGAUGCUCUGAAAGCAGAG
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Structure
        10         20         30        40        50        60  
UGUGCAGAGAGACCCAU-    -| GA     CC       GA  G   AG    CUGGUGAA 
                  UUCC CG  CCCAU  CAGGGCC  CC CGC  GUCG        G
                  GAGG GC  GGGUA  GUUCCGG  GG GCG  CAGC        C
GAGACGAAAGUCUCGUAG    U^ UC     CC       AC  -   A-    GGGGCACA 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-2_5p

mirBase accessionNone
Sequence
0- CCCAGGGCCGACCGCGCAGGUCG -23
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Star sequence

Cfa-Novel-2_3p*

mirBase accessionNone
Sequence
43- ACAGCGGGCAGGCCUUGCCAU -64
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