MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-935-v1

Family name MIR-935 (all species)
Seed AGUUACC
Species Dog (Canis familiaris)
MiRBase ID
Paralogues Cfa-Mir-935-v2 
Orthologues Bta-Mir-935-v1  Dno-Mir-935-v1  Hsa-Mir-935-v1  Mml-Mir-935-v1  Mmu-Mir-935-v1  Ocu-Mir-935-v1  Rno-Mir-935-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr1: 103250645-103250704 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C  CCAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-935-v1_5p*

mirBase accessionNone
Sequence
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
Mature sequence

Cfa-Mir-935-v1_3p

mirBase accessionNone
Sequence
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence