MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-8908-P5

Family name MIR-8908 (all species)
Seed GCAUAGG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-8908e
Paralogues Cfa-Mir-8908-P1a1  Cfa-Mir-8908-P1a2  Cfa-Mir-8908-P1b  Cfa-Mir-8908-P1c  Cfa-Mir-8908-P1d  Cfa-Mir-8908-P2  Cfa-Mir-8908-P3  Cfa-Mir-8908-P4a1  Cfa-Mir-8908-P4a2  Cfa-Mir-8908-P4b  Cfa-Mir-8908-P4c  Cfa-Mir-8908-P6  Cfa-Mir-8908-P7  Cfa-Mir-8908-P8 
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chrX: 114676848-114676903 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8908-P5)
Mir-8908-P3 chrX: 114675836-114675892 [-] UCSC Ensembl
Mir-8908-P5 chrX: 114676848-114676903 [-] UCSC Ensembl
Mir-8908-P2 chrX: 114678505-114678561 [-] UCSC Ensembl
Mir-8908-P4a2 chrX: 114679976-114680034 [-] UCSC Ensembl
Mir-8908-P1c chrX: 114680911-114680970 [-] UCSC Ensembl
Mir-8908-P1a2 chrX: 114684100-114684159 [-] UCSC Ensembl
Mir-8908-P4b chrX: 114686169-114686227 [-] UCSC Ensembl
Mir-8908-P1b chrX: 114687030-114687089 [-] UCSC Ensembl
Mir-8908-P4a1 chrX: 114688877-114688935 [-] UCSC Ensembl
Mir-8908-P1a1 chrX: 114689813-114689872 [-] UCSC Ensembl
Mir-8908-P6 chrX: 114717103-114717160 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACCGGGUUCUGUGCUGUGUGUAGUGCCCUGCAUAGGAAGGUCCUGAUUACCAGUAUGAUGUGUAACAGUGCCUGCCUGGGUAGAGUAAUGCUCCACAAGAACAUCUUUCCAGUG
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Structure
        10         20         30        40        50        
ACACCGGGUUCUGUGCU-   U-|  G   C    A    A   UC   A    - AGU 
                  GUG  GUA UGC CUGC UAGG AGG  CUG UUAC C   A
                  CAC  CGU AUG GAUG GUCC UCC  GAC AAUG G   U
GUGACCUUUCUACAAGAA   CU^  A   A    G    G   GU   -    U UAG 
    110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-8908-P5_5p

mirBase accessionMIMAT0034426
Sequence
0- UGCAUAGGAAGGUCCUGAUUACC -23
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Proposed targets TargetScanVert: cfa-miR-8908e
miRDB: MIMAT0034426
Co-mature sequence

Cfa-Mir-8908-P5_3p

mirBase accessionNone
Sequence
34- UAACAGUGCCUGCCUGGGUAGA -56
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