MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-8-P2b

Family name MIR-8 (all species)
Seed AACACUG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-141
Paralogues Cfa-Mir-8-P1a  Cfa-Mir-8-P1b  Cfa-Mir-8-P2a  Cfa-Mir-8-P3a 
Orthologues Aae-Mir-8  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2b  Cbr-Mir-8  Cel-Mir-8  Cgi-Mir-8  Cin-Mir-8-P2  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2b  Dpu-Mir-8  Dre-Mir-8-P2b  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P2b  Hme-Mir-8  Hsa-Mir-8-P2b  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Mdo-Mir-8-P2b  Mml-Mir-8-P2b  Mmu-Mir-8-P2b  Npo-Mir-8  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2b  Ovu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P2b  Sha-Mir-8-P2b  Sko-Mir-8  Spu-Mir-8  Tca-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr27: 38081675-38081739 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2b)
Mir-8-P2b chr27: 38081675-38081739 [-] UCSC Ensembl
Mir-8-P1b chr27: 38082097-38082159 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAGCUGCACGUCCGCCGGCUCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAGUCACGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGCCGGUUCCCUCAGCAGUGACCUU
Get precursor sequence
Structure
        10          20        30          40        50        60 
CUGGAGCUGCACGUCCG--       U   U       --|   U          AUGGUCUAG 
                   CCGGCUC GGG CCAUCUU  CCAG ACAGUGUUGG         U
                   GGCCGGG CCC GGUAGAA  GGUC UGUCACAAUC         C
UUCCAGUGACGACUCCCUU       C   C       AU^   -          CUCGAAGCA 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-8-P2b_5p*

mirBase accessionNone
Sequence
0- CAUCUUCCAGUACAGUGUUGGA -22
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Mature sequence

Cfa-Mir-8-P2b_3p

mirBase accessionMIMAT0009876
Sequence
42- UAACACUGUCUGGUAAAGAUGGC -65
Get sequence
Proposed targets TargetScanVert: cfa-miR-141
miRDB: MIMAT0009876