MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-506-P7

Family name MIR-506 (all species)
Seed ACUCCAG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-514
Paralogues Cfa-Mir-506-P1  Cfa-Mir-506-P2d  Cfa-Mir-506-P2e  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b 
Orthologues Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Dno-Mir-506-P7f  Dno-Mir-506-P7g  Dno-Mir-506-P7h  Dno-Mir-506-P7i  Hsa-Mir-506-P7a  Hsa-Mir-506-P7b  Hsa-Mir-506-P7c  Mml-Mir-506-P7a  Mmu-Mir-506-P7  Ocu-Mir-506-P7d  Ocu-Mir-506-P7e  Rno-Mir-506-P7 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chrX: 115688019-115688076 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P7)
Mir-506-P1 chrX: 115652425-115652482 [-] UCSC Ensembl
Mir-506-P2d chrX: 115652721-115652779 [-] UCSC Ensembl
Mir-506-P3a chrX: 115658398-115658456 [-] UCSC Ensembl
Mir-506-P3b chrX: 115658609-115658666 [-] UCSC Ensembl
Mir-506-P2e chrX: 115665393-115665450 [-] UCSC Ensembl
Mir-506-P7 chrX: 115688019-115688076 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCAACCUGGACAUUCUUUAUGUAGUACCCUACUCCAGAGAGUGGCAAUCAUUUGUAAUUAUAUGUGAUUGACACCUCUGUGAGUGGAGUAAUGCAUGACAUGUACGACACAGAUGAU
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Structure
        10          20        30         40        50        
GUCAACCUGGACAUUCU--       G   C      -|    A   G       UUGUA 
                   UUAUGUA UAC CUACUC CAGAG GUG CAAUCAU     A
                   AGUACGU AUG GGUGAG GUCUC CAC GUUAGUG     U
UAGUAGACACAGCAUGUAC       A   A      U^    -   A       UAUAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-506-P7_5p

mirBase accessionNone
Sequence
0- UACUCCAGAGAGUGGCAAUCAUU -23
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Star sequence

Cfa-Mir-506-P7_3p*

mirBase accessionMIMAT0009877
Sequence
35- UGAUUGACACCUCUGUGAGUGGA -58
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Proposed targets TargetScanVert: cfa-miR-514
miRDB: MIMAT0009877