MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-506-P3b

Family name MIR-506 (all species)
Seed CUGUCAC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-508b
Paralogues Cfa-Mir-506-P1  Cfa-Mir-506-P2d  Cfa-Mir-506-P2e  Cfa-Mir-506-P3a  Cfa-Mir-506-P7 
Orthologues Bta-Mir-506-P3  Cpo-Mir-506-o3  Dno-Mir-506-P3  Hsa-Mir-506-P3  Mml-Mir-506-P3  Ocu-Mir-506-P3 
Node of Origin (locus) C. familiaris
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chrX: 115658609-115658666 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P3b)
Mir-506-P1 chrX: 115652425-115652482 [-] UCSC Ensembl
Mir-506-P2d chrX: 115652721-115652779 [-] UCSC Ensembl
Mir-506-P3a chrX: 115658398-115658456 [-] UCSC Ensembl
Mir-506-P3b chrX: 115658609-115658666 [-] UCSC Ensembl
Mir-506-P2e chrX: 115665393-115665450 [-] UCSC Ensembl
Mir-506-P7 chrX: 115688019-115688076 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCACCACCUUCAGCUGAGUGUAGUGCUCUACUUGAGAGGGUGACAUUCACAGAUACUGGACAUGACUGUCACCUUUUUUGAGUACAGUAAUGCACAUUUUAUACAAUCUAUAUGGU
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Structure
        10          20        30         40        50        
GGCCACCACCUUCAGCUGA--     G    C    UG -|         U   CAGAUA 
                     GUGUA UGCU UACU  A GAGGGUGACA UCA      \
                     CACGU AUGA AUGA  U UUUCCACUGU AGU      C
UGGUAUAUCUAACAUAUUUUA     A    C    GU U^         C   ACAGGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-506-P3b_5p*

mirBase accessionNone
Sequence
0- UACUUGAGAGGGUGACAUUCA -21
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Mature sequence

Cfa-Mir-506-P3b_3p

mirBase accessionMIMAT0034425
Sequence
36- ACUGUCACCUUUUUUGAGUACA -58
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Proposed targets TargetScanVert: cfa-miR-508b
miRDB: MIMAT0034425