MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-339

Family name MIR-339 (all species)
Seed CCCUGUC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-339-1
Paralogues
Orthologues Bta-Mir-339  Cpo-Mir-339  Dno-Mir-339  Ete-Mir-339  Hsa-Mir-339  Mml-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr6: 15853520-15853576 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCCACAACAGCAGCUCUGGCAGCCGCCCUCCCUGUCCUCCAGGAGCUCACUUAUAUCUGGCCGUGAGCUCCUCGAGGCCAGAGCCCGCGUCUGCCUCCACUCAGCACCAAUCCAA
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Structure
        10         20        30        40        50        
CGGCCACAACAGCAGCUCU-|    C   CCUCC   U    C          UUAUA 
                    GGCAG CGC     CUG CCUC AGGAGCUCAC     U
                    CCGUC GCG     GAC GGAG UCCUCGAGUG     C
AACCUAACCACGACUCACCU^    U   CCCGA   C    C          CCGGU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-339_5p

mirBase accessionMIMAT0011134
Sequence
0- UCCCUGUCCUCCAGGAGCUCACU -23
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Proposed targets TargetScanVert: cfa-miR-339
miRDB: MIMAT0011134
Star sequence

Cfa-Mir-339_3p*

mirBase accessionNone
Sequence
35- UGAGCUCCUCGAGGCCAGAGCC -57
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