MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-130b
Paralogues Cfa-Mir-130-P1c  Cfa-Mir-130-P2a  Cfa-Mir-130-P2b  Cfa-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr26: 30924432-30924491 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P2a chr26: 30924110-30924169 [+] UCSC Ensembl
Mir-130-P4a chr26: 30924432-30924491 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAGAGAGGCGCCGGCAGGCCUGCCUGACACUCUUUCCCUGUUGCACUACUGUGGGCCGCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGCCCACCCCACCACCCUUAGUCC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGAGAGAGGCGCCGGCA--|     C    CA       CC         A  GUGGGC 
                    GGCCUG CUGA  CUCUUUC  UGUUGCACU CU      C
                    CCGGAC GGCU  GGGAAAG  GUAACGUGA GA      G
CCUGAUUCCCACCACCCCAC^     U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
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Mature sequence

Cfa-Mir-130-P4a_3p
mirBase accessionMIMAT0006659
Sequence 
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-130b
miRDB: MIMAT0006659