MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-125a
Paralogues Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cfa-Mir-10-P2b  Cfa-Mir-10-P2c  Cfa-Mir-10-P2d  Cfa-Mir-10-P3c  Cfa-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(canFam3_add)		 chr1: 105400273-105400332 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)		 Mir-10-P3b chr1: 105400273-105400332 [-] UCSC Ensembl
Let-7-P1b chr1: 105400740-105400806 [-] UCSC Ensembl
Mir-10-P2b chr1: 105400925-105400984 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCACACACCACACUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACAUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCGUAACCACAAGCCUGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60
CCACCACACACCACACU--|    CCU UG  UC  UG   C    UA        GGACA 
                   GCCGG   C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   G  CC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCGAACACCAAUG^    UGC GU  GA  GU   U    --        GGGAC 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-10-P3b_5p
mirBase accessionMIMAT0006609
Sequence 
0- UCCCUGAGACCCUUUAACCUGUGA -24
Get sequence
Proposed targets TargetScanVert: cfa-miR-125a
miRDB: MIMAT0006609
Star sequence

Cfa-Mir-10-P3b_3p*
mirBase accessionNone
Sequence 
38- ACAGGUGAGGUUCUUGGGAGCC -60
Get sequence