MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-788-v1

Family name MIR-788 (all species)
Seed GAAAUGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-788
Paralogues Cel-Mir-788-v2 
Orthologues Cbr-Mir-788-v1 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrX: 8485301-8485362 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-788-v1)		 Mir-788-v1 chrX: 8485301-8485362 [-] UCSC Ensembl
Mir-788-v2 chrX: 8485302-8485361 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUACAAAUUUUCAGCUGGAAGCUCACUUUUCCGCUUCUAACUUCCAUUUGCAGAGUUCAAGUAAUCUGGAAAUGGAUUAGAAUCGUGGAAAAGUUAGUGAAUAGCAGUUUUCAAAAUUGUG
Get precursor sequence
Structure
        10        20          30          40        50        60
AUUACAAAUUUUCAGCUGGAA--   C          --|     CU       G   AGUUC 
                       GCU ACUUUUCCGC  UUCUAA  UCCAUUU CAG     A
                       UGA UGAAAAGGUG  AAGAUU  AGGUAAA GUC     A
GUGUUAAAACUUUUGACGAUAAG   U          CU^     --       G   UAAUG 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-788-v1_5p*
mirBase accessionMIMAT0004223
Sequence 
0- UCCGCUUCUAACUUCCAUUUGCAG -24
Get sequence
Proposed targets microrna.org: MIMAT0004223
TargetScanWorm: cel-miR-788
Mature sequence

Cel-Mir-788-v1_3p
mirBase accessionMIMAT0015240
Sequence 
38- GGAAAUGGAUUAGAAUCGUGGAAA -62
Get sequence
Proposed targets microrna.org: MIMAT0015240